Doutorado em Genética e Melhoramento de Plantas (EA)
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Item Potencial genético de populações segregantes de feijoeiro-comum para escurecimento e cocção dos grãos(Universidade Federal de Goiás, 2012-03-08) Silva, Fernanda de Cássia; Pereira, Helton Santos; Melo, Leonardo Cunha; Melo, Patrícia Guimarães Santos; http://lattes.cnpq.br/1508679345970114; Melo, Patrícia Guimarães Santos; Chiorato, Alisson Fernando; Brasil, Edward Madureira; Pereira, Helton SantosThe obtain cultivars which have slow darkening allows storage of grains for a longer period, making it more flexible bean market. Recent studies have demonstrated the possibility of selecting line of common bean grain slow darkening. The objectives of this study were i) to select parents who meet slow darkening, low cooking time after storage and productivity, ii) select promising populations segregating for extraction of lines, iii) determine the relationship between the slow darkening of the grains and shortest time cooking after storage, and iv) determine the genetic control of slow darkening the grains in the populations evaluated. We used twelve common bean genotypes divided into two groups: group I consists of two genotypes with slow darkening of grains, and group II consisted of ten genotypes with regular darkening of grains, which were crossed according to the partial diallel genetic design, yielding twenty populations. The population obtained in this diallel were evaluated, along with his parents in Santo Antônio de Goiás/inverno/2010-F3 (STO) and Ponta Grossa/águas/2010-F4 (PGA) in randomized complete block design with three replications and four lines meters. The characters were: the darkening of grain during the storage, by grading scale, the cooking time after storage (TCA) by means of Mattson cooker, and yield. We conducted analyzes of individual variance and joint, and then analyzes diallel during storage. It was observed phenotypic segregation to grain in the darkness of populations, from the chi-square test. For the darkening of grains, the parents BRSMG Madrepérola (group I), IPR Siriri e CNFC 10429 (group II) contributing to the slow darkening of the grain, with high CGC. The population that better were BRSMG Madrepérola x CNFC 10429 and BRSMG Madrepérola x IPR Siriri. For TCA, the parents who contributed to low cooking time were BRS Requinte (group I), IPR Saracura and BRSMG Majestoso (both group II). The populations that showed the reduction to this character were BRS Requinte x BRS Estilo and BRS Requinte x BRS 9435 Cometa. For grain yield the parents who contributed to this character additions were BRSMG Madrepérola (group I), BRS Estilo and CNFC 10429 (group II). Among the best populations for productivity, the most relevant populations BRSMG Madrepérola x CNFC 10429, BRSMG Madrepérola x CNFC10429, BRSMG Madrepérola x BRS Estilo, BRS Requinte x CNFC 10429. There were no parents and populations who meet the desirable phenotypes for the tree characters together. However, the line CNFC 10429 and populations BRSMG Madrepérola x CNFC 10429 e BRSMG Madrepérola x BRS Estilo sood out by gathering slow darkening and productivity, with promising for plant breeding. No linear association has been detected between the slow darkening and shorter cooking grain after storage. High correlation was found between the evaluation periods for the darkening of the grain. For the darkening of the grain populations were detected with mono and bigenic inheritance, indicating that this character is controlled by few genes. It was found also that for the elucidation of the genetic control of slow darkening of grain these is a need to evaluate different populations in different environments due to the presence of G x E interation for this trait. Based on these results suggest that there is variability in the darkening of the grains and parents are well variability in the darkening of the grains and parents are well adapted, and these may lead to promising populations, aiming at the selection of strains with slow darkening of the grains.Item Filogeografia de populações naturais do buriti (Mauritia flexuosa L. f., Arecaceae) do Brasil Central(Universidade Federal de Goiás, 2012-04-23) Lima, Natácia Evangelista de; Collevatti, Rosane Garcia; http://lattes.cnpq.br/9979596352166630; Collevatti, Rosane Garcia; Coelho, Alexandre Siqueira Guedes; Figueiredo, Lúcio Flávio de AlencarMauritia flexuosa, popularly known as buriti, is a large palm that occurs especially in association with wetlands (veredas) in South America. It is distinguished because of its economic importance for local populations from Central Brazil, and as source of food, breeding site and haven for the terrestrial and aquatic fauna. The effect of historical demographic events and climatic fluctuations in the current distribution of buriti can provide clues about the responses of this species to anthropic pressures and to future climatic changes. For this purpose we studied the phylogeography of M. flexuosa. The results were based on the differences of sequences from the following chloroplast intergenic regions: psbA-trnH, trnC-ycf6 and trnS-trnG. We sampled 170 individuals from 14 localities throughout Central Brazil, including populations in the Amazon, Araguaia/Tocantins, Paraná and São Francisco Basins. Since the distribution of M. flexuosa is restricted to wetlands, which are surrounded by large areas of dry lands that may act as barriers to gene flow, we hypothesized that populations are highly differentiated and that River Basins act as phylogeographic breaks. The combined data from the three sequence regions generated a fragment of 1205bp, with 11 haplotypes. Nucleotide diversity was low (π = 0.005314 +/- 0.002800) and haplotipic diversity was high (h =0,791) for the combined data. The population parameter θ, and nucleotide and haplotype diversity per population, shows a pattern where populations from different geographic regions have a relative genetic uniformity, separated by steep losses on the diversity; what characterizes colonization by sectors. Differentiation among populations was significant (P< 0.001), but no sign of recent bottleneck on population size followed by expansion was found (D Tajima=-1.955 p = 0.00210; Mismatch Distribution=0.034 p=0.7467 and growth parameter g=402. 402, 95% = -334.961 ICredi, ICreds 95% = 999.91). We could group populations by location in the phylogenetic analysis (Network software), but they do not support the initial hypothesis that the major basins act as important phylogeographic breaks for the distribution of maternal lineages of M. flexuosa. The studied populations showed ancient time of coalescence. This research provided more details on the dynamics and genetic structure of the remnant of buriti populations, helping to elucidate the evolutionary history of this neotropical palm.Item Estrutura genética e sistema de cruzamento em Eugenia dysenterica DC. (Mvrtaceae)(Universidade Federal de Goiás, 2014-03-28) Barbosa, Ana Clara de Oliveira Ferraz; Collevatti, Rosane Garcia; Telles, Mariana Pires de Campos; http://lattes.cnpq.br/4648436798023532; Telles, Mariana Pires de Campos; Martins, Karina; Figueiredo, Lúcio Flávio de Alencar; Chaves, Lázaro José; Coelho, Alexandre Siqueira GuedesThe genetic structure of a species corresponds to the amount of genetic variability and its distribution within and among local populations and individuals. The patterns of variability among individuals in a local population are highly dependent of mating system. The goal of this study was to evaluate the mating system, the diversity and genetic structure in populations of E. dysenterica in local and regional scale. The assessment of the mating system and the analysis of genetic structure at the local scale were performed in a population of Mimoso – GO and for the analysis of genetic structure at the regional scale were analyzed 23 natural populations of E. dysenterica derived from six Brazilian states (Goiás, Minas Gerais, Bahia, Mato Grosso, Tocantins and Piauí). For all studies seven polymorphic microsatellite loci were used. Considering the 20 families analyzed, the multilocus outcrossing rates (tm = 0.918) and single locus (ts = 0.797) were high and significant. From a total of 399 seeds evaluated, it was possible to determine the pollen donor to 218 seeds (55%) with confidence level of 90%, 174 seeds (44%) with confidence level of 95% and 65 seeds (16%) with confidence level of 99%. In 15 families evaluated were possible to verify the occurrence of multiple paternity, with the number of pollen donor per fruit ranged from one to three. The results presented show that the species E. dysenterica presents mixed mating system and that there is multiple paternity in this species. The intrapopulational spatial genetic structure was positive (R2 = 0.01646, p < 0.001), which was expected since species generally have spatial restriction to disperse. The spatial genetic structure was significant (Sp = 0.0143) and genetic neighborhood (Nb) was equal to 69.93 km. On average, about 30 individuals were analyzed by subpopulation for all loci. The average number of alleles per locus was equal to 9, the genetic diversity was high (0.725) and the observed frequency of heterozygotes (Ho) was 0.610. Were found 18 private alleles in 10 subpopulations. The results for the fixation index ((f) in the subpopulations ranged between -0.058 and 0.338, with an overall value of 0.162, indicating excess of homozygotes in relation to the expected under HWE. The genetic differentiation between subpopulations can be considered relatively high (FST = 0.161). The Mantel test indicates that the genetic divergence of 24 subpopulations evaluated is structured in geographic space (r = 0.427, p < 0.001), suggesting that the model of isolation by distance or stepping-stone are adequate to explain the spatial pattern of genetic divergence among subpopulations of E. dysenterica evaluated.Item Divergência genética e predição de valores genotípicos em soja(Universidade Federal de Goiás, 2014-05-07) Godoi, Cláudio Roberto Cardoso de; Duarte, João Batista; http://lattes.cnpq.br/4117228759548186; Duarte, João Batista; Silva Filho, João Luis da; Toledo, José Francisco Ferraz de; Chaves, Lázaro José; Coelho, Alexandre Siqueira GuedesSoybean breeding programs practice selection of high genetic value genotypes with two main objectives: a) to use them as parents in the hybridization process (first stage of the program), and b) to indicate them as new cultivars (final stage of the program). In this context, a first study used microsatellite markers (SSR) to assess the genetic diversity of soybean germplasm adapted to the Brazilian conditions. The experimental material consisted of 192 accessions, which included both introductions and Brazilian germplasm. The genetic divergence was assessed by descriptive analysis and the Rogers-W genetic distance. A total of 222 alleles were identified in the 37 genotyped loci, with an average of six alleles and a range of 2 to 14 alleles per locus. The genotypes were clustered according to the origin of the germplasm, and resulted in two groups: one group formed by introductions and other by Brazilian genotypes. Eighty five percent of the genetic distances estimates were above 0.70, suggesting that the assessed germplasm has good potential for hybridization in soybean breeding programs. It was concluded that the SSR markers are useful to identify divergent genotypic groups, as well as genotypic combinations with high genetic variability. It also became clear that the use of introduced germplasm ensures the incorporation of alleles necessary to increase the genetic base of soybeans and, consequently, the variability needed for the selective process. In a second study, the mixed model approach was used to assess some strategies of estimation and prediction of genotypic values for grain yield in the soybean regional yield trials. A total of 111 genotypes classified into three maturity groups were sown in up to 23 experiments in Central Brazil. The experiments were carried out in randomized complete block designs, with three replications. The biometrical analyses followed the fixed model and mixed model approaches, in the latter case assuming the genotypic effects as random. In the mixed model approach, analyses were made with or without information from the relationship estimates obtained either by genealogy or SSR markers, arranged in a genotypic covariance matrix (G). Also, in a context of spatial analysis, different structures were used in the residual covariance matrix (R) for each mixed model adjusted. The following conclusions were obtained: i) the fixed model analysis is adequate to estimate genotypic values in soybean trials with balanced data and orthogonal design; ii) under such conditions and intermediate to low heritability, the inclusion of relationship information associated to G matrix, although does not ensure the best fit models, improves the precision in predicting genotypic values; iii) the use of spatial structures associated to R matrix, in presence of the residual autocorrelation, improves the goodness of model fit to the data; and, iv) the choice of model for the analysis does not change the ranking of the genotypes in high heritability situations and, therefore, does not impact significantly on the selection of superior genotypes.Item Reação de genótipos de soja ao pratylenchus brachyurus(Universidade Federal de Goiás, 2014-05-16) Silva, Adélia Cristina Fernandes; Melo, Patrícia Guimarães Santos; Rocha, Mara Rúbia da; http://lattes.cnpq.br/4660306671671575; Rocha, Mara Rúbia da; Melo, Patrícia Guimarães Santos; Campos, Hércules Diniz; Meyer, Maurício Conrado; Araújo, Leila Garcês deSoybean is the most important crop in Brazil, which is known for being the second largest producer of the grain. There are several phytosanitary problems that affect the culture and cause losses in production, including plant nematodes. Pratylenchus brachyurus is one of the most widespread nematodes in soybean producing areas of Brazil. The search for genotypes that have resistance to this plant nematode has been widespread, but there is still disagreement regarding the behavior of several brazilian cultivars. Evaluation of soybean cultivars in infested areas has not indicated the existence of materials resistant or tolerant. Thus, this study was to evaluate the reaction to P. brachyurus of six soybean cultivars and eight F1 populations originated from crosses in partial diallel arrangement. We also evaluate the behavior of cultivars exposed to different inoculum concentrations in three planting dates. The first study aimed to evaluate the reaction of cultivars and F1 populations of the plant nematode P. brachyurus. Experiment were conducted in naturally infested field conditions to evaluate the cultivars MT/BR51 (Xingu), BRSGO Caiapônia, MSOY 8360RR, BRS 8560RR, Emgopa 313RR and MSOY 7639RR and another in greenhouse conditions, which were evaluated in addition to these cultivars, the F1 progenies obtained by crossing between the parents of group I (Xingu and BRSGO Caiapônia) and group II (MSOY 8360RR, BRS 8560RR, Emgopa 313RR and MSOY 7639RR). In the field experiment all cultivars were susceptible to plant nematode, except the cultivar Xingu that showed behavior of resistance in the evaluation at 60 days after planting (DAP) with a RF of 0,80. However, this cultivar enabled the multiplication of P. brachyurus in the evaluation at 30 DAP. In the greenhouse condition, all parents behaved as resistant. The diallel analysis revealed the presence of non-additive and additive effects in controlling resistance. The Xingu cultivar showed the best GCA and cross between the cultivars Xingu and MSOY 8360 RR was the most promising in generating progeny with resistance reaction. The second study aimed to evaluate the reaction of soybean cultivars BRSGO Caiapônia, MT/BR51 (Xingu), MSOY 8360RR, MSOY 7639RR, BRS 8560RR and Emgopa 313RR, subjected to different inoculums concentrations in three planting dates. For this, three experiments were conducted under greenhouse conditions to evaluate the reaction of soybean cultivars under initial inoculum concentrations of 200, 400 or 600 juveniles and/or adults of P. brachyurus per plant in three planting dates. The planting date interferes with the infection of P. brachyurus and in the development of plants. Temperatures recorded in the second planting date, probably favored the multiplication of the nematode resulting in the lowest root development of cultivars. In this planting date was observed the highest population density of the nematode. In the third planting date the average temperature of the environment presented milder. At this planting date it was noted that all cultivars had lower population densities of P. brachyurus and resistant behavior (RF<1). There was a trend towards growing the plant nematode population density increased as the inoculums concentration in the first and second planting dates. In their results, we can observe the vulnerability of Brazilian soybean genotypes to P. brachyurus and the existence of variability of the pathogen. More research is needed to identify genotypes that have resistance to this nematode, as well as population studies related to the nematode. These studies should take into account the annual variation of nematode population due to low infectivity observed in dates of warmer temperatures.Item Variabilidade e divergência genética de caracteres quantitativos e marcadores neutros em populações de Eugenia dysenterica DC(Universidade Federal de Goiás, 2014-10-16) Novaes, Carolina Ribeiro Diniz Boaventura; Telles, Mariana Pires de Campos; http://lattes.cnpq.br/4648436798023532; Chaves , Lázaro José; http://lattes.cnpq.br/9990967290797379; Chaves, Lázaro José; Zucchi, Maria Imaculada; Grattapaglia, Dario; Coelho, Alexandre Siqueira Guedes; Ganga, Rita Maria DevósGenotypic variations knowledge is an important tool that can point to the best approach for genetic resources maintenance, for both conservation and breeding purposes. To analyze and compare the phenotypic and genetic variation of wild subpopulations of Eugenia dysenterica DC., a fruity tree, 25 subpopulations were sampled in five states of the Brazilian Cerrado. Within each subpopulation, six trees were sampled and twenty fruits (maternal siblings) collected. Five fruits of each family were evaluated for morphometric variables of fruits and seeds. Twenty seeds of each family were randomly sown in each one of four blocks, five seeds per plot, established in a common garden experiment. Hierarchical model analysis of variance and variance components estimation were performed for fruit, seeds and early development traits and QST were estimated for early development traits. Four individuals per family were genotyped using nine microsatellite loci. Significant phenotypic and genotypic variations were observed both between subpopulations and between families within subpopulations. The highest proportion of the variance was found among families. Heritability estimates were 0.23 and 0.27 for growth rate and number of leaves and greater than 0.34 for other traits, indicating high potential for selective gain. Rapid early development is important for seedlings commercial production. Above ground biomass represented 15% of total biomass. Subpopulations are significantly structured for root length, height and diameter growth rates (QST 0.34, 0.23 and 0.20), but weak structure was establish for biomass and seedling emergence (QST <0.04). It has high genetic diversity, with average expected heterozigosity of 0.642. The mating system was mainly outcrossing (ta = 0.73), with high genetic differentiation between subpopulations (θP = 0.198), similar to previous studies. QST - FST contrasts were not significant for sixteen out of eighteen traits, suggesting genetic drift as the main source of phenotypic differentiation. Even though seedling emergence average time and root system fresh mass genetic similarity is granted to uniform selection. Quantitative and genetic distances clustered two distinct groups spatially structured, with respect to the Corumbá and São Bartolomeu river valley, in addition to the Chapada dos Veadeiros and Vão do Paranã region. Subpopulation 21 (Cocalinho-MT) quantitatively diverged from the two clusters. An in vivo collection of E. dysenterica was established for ex situ conservation. Genetic characterization and sampling extent suggest that the collection portrays well the cagaiteira’s wild population for selection purposes.Item Estrutura genética, fluxo gênico e sistema reprodutivo de Anacardium occidentale L. do cerrado(Universidade Federal de Goiás, 2014-11-22) Oliveira, Leciane Karita de; Collevatti, Rosane Garcia; http://lattes.cnpq.br/9979596352166630; Telles, Mariana Pires de Campos; http://lattes.cnpq.br/4648436798023532; Telles, Mariana Pires de Campos; Rodrigues, Flavia Melo; Almeida, Luciane Madureira de; Chaves, Lazaro José; Soares, Thannya NascimentoBecause constant degradation of the Cerrado the persistence of long-term populations in their natural habitat may be compromised, as a result of loss of genetic variability. To gene-rate useful information for the implementation of conservation programs in situ and ex situ to Anacardium occidentale L. ecotype from Cerrado, species popularly known as cajuzinho-do-campo. This work had the objective: evaluate, based on microsatellite markers, the ma-ting system, spatial pattern of gene flow intra-population, genetic structure of spontaneous populations and the germplasm collection of the Federal University of Goiás and the landsca-pe influence the genetic structure of populations. For the difference in scale and type of analysis of populations, the work was separated into three chapters. In the first, titled "Ma-ting system, space genetic structure and contemporary gene flow in Anacardium occidentale L ", analyzes were made to answer questions related to the reproductive system and evoluti-onary processes that occur within a population of the species, individuals were sampled three stages of life. As a result it was observed that the species has mating system predomi-nantly outcrossing, the difference between multilocus and single locus outcrossing rate was positive and significant, indicating 16.4% of outcrossing between related individuals. Only 0.05% of the seeds were from selfing. Was assigned paternity to 45% of the seeds. In all ma-trices multiple paternity was observed with 6.7 effective number of pollen donors in each matrix. The pollen pool received by matriz had significant difference (фFT = 0.124). The pol-len dispersal occurred in greater proportion to short distances (41 m), but may reach distan-ces greater than 130 m. The effective area of pollination was 9410 m2 and the effective size of the neighborhood of 18 individuals. The seed dispersal probably occurs at distances grea-ter than the sampled area, which limited the powers of parents of juvenile individuals. Found high genetic diversity within the populationwith reduction the values of adults for seeds and increased inbreeding. The adults showed high genetic neighborhood (262 individuals), re-sulting from weak spatial genetic structure. In the second chapter, titled "Diversity and gene-tic structure of spontaneous populations and germplasm collection of Anacardium occiden-tale L. ecotype from Cerrado", populations were analyzed distributed in the Cerrado to as-sess the genetic variability and its structure between populations, was also analyzed the germplasm collection as the variability and its representation compared to the population. Was observed that the populations have high genetic variability and significant inbreeding. The geographical distribution of genetic diversity and allelic richness showed pattern central - peripheral. Genetic differentiation was weak and significant (RST = 0.095), with a pattern of isolation by distance. Populations with distance of up to 140 m are more similar than expec-ted by chance. There were no significant signs of genetic bottleneck. Individuals in the germ-plasm collection showed high genetic similarity, genetic differentiation was higher among offspring than between populations (θS = 184 and θP = 0.014, respectively). The variability of the collection is representative as the existing variability in spontaneous populations. Fi-nally, in the third chapter titled "Effects pattern of landscape on the variability and genetic structure of populations Anacardium occidentale L. ecotype from Cerrado", we analyzed the genetic structure at the landscape scale to Goiás state populations. Was observed that the main type of matrix around the populations are remaining natural vegetation and pasture, with great variation in the remaining percentage. There was a relationship between the change in allelic richness and remaining percentage of natural vegetation and predominant matrix around the populations in the lowest values were found when the predominant type of matrix is the pasture. Inbreeding was related to landscape when characterized for 2 km scale, where there was a higher inbreeding when the predominant type of matrix is the pas-ture. Due to anthropogenic changes in the landscape there was genetic discontinuity between eight pairs of populations. These results indicate that the fragmentation and change in land use are influencing the genetic variability and gene flow of populations.Item Pré-melhoramento genético, floração in vitro e criopreservação de orquídeas nativas do cerrado(Universidade Federal de Goiás, 2014-11-27) Carneiro, Luciano Lajovic; Faria, Ricardo Tadeu de; Sibov, Sérgio Tadeu; http://lattes.cnpq.br/4627553641870284; Sibov, Sérgio Tadeu; Carvalho, Virgínia Silva; Galdiano Junior, Renato Fernandes; Ferreira, Wagner de Melo; Santos, Izulmé Rita ImaculadaThe vast majority of orchids species are pollinated by insects, mainly bees, butterflies and moths. The orchid family is generally considered allogamic, but information about the type of reproduction are unknown for most species. Little information exist about orchids of Cerrado, which hinders plant breeding of these species and postpones their use in developing new varieties for the ornamental market. Recent methods of plant biotechnology can assist both plant breeding and conservation of these species, such as induction of early in vitro flowering as important technique particularly for species with a long cycle, and cryopreservation as a tool for the conservation of genetic variability. This study aims to contribute to the improvement and conservation of orchids with distribution in the Brazilian Cerrado. Selfcompatibility was evaluated for seven species: Cohniella cepula, Cyrtopodium eugenii, C. saintlegerianum, Epidendrum densiflorum, Epidendrum nocturnum, Epidendrum secundum e Lockhartia goyazensis. Only three were autocompatible: Epidendrum nocturnum, Epidendrum secundum and Lockhartia goyazensis. Interspecific compatibility was assessed for Cyrtopodium and Epidendrum genera, using reciprocal crosses. Just E. nocturnum and C. eugenii produced viable seeds. For early in vitro floral induction 20 different treatments were used through nutritional changes and use of cytokinin (BAP) in modified MS medium. Only C. cepula showed positive responses to treatment with formation of 46% floral stems. The effect of BAP was evident in the results. Cryopreservation was tested by vitrification of seeds of seven species of orchids, obtained from outcrossing. The responses to cryopreservation were partially different for each species. Most seeds tested showed any significant differences between freezing in liquid nitrogen without cryoprotectants and control without freezing. The freezing without cryoprotectant was successful to maintaining seed viability for all species, C. cepula 63%, C. eugenii 59%, C. sainttlegerianum 70%, E. densiflorum 42%, E. nocturnum 31%, E. secundum 69% and L. goyazensis 52%. Only E .nocturnum and C. cepula showed a significant reduction in viability when submitted to freezing in liquid nitrogen. The results presented here are useful for the development of breeding programs for orchids and conservation of these species.Item Montagem e caracterização do transcritoma de cana-de-açúcar (saccharum spp.) utilizando dados de sequenciamento de nova geração(Universidade Federal de Goiás, 2015-01-22) Melo, Arthur Tavares de Oliveira; Coelho, Alexandre Siqueira Guedes; http://lattes.cnpq.br/0840926305216925; Coelho, Alexandre Siqueira Guedes; Pappas Júnior, Georgios Joannis; Borba, Tereza Cristina de Oliveira; Brondani , Cláudio; Novaes, EvandroThe sugarcane is one of the most important crop species to provide sugar and renewable energy in the world. Due to the high amount of repetitive elements and the various polyploidization events suffer during its evolution, the Saccharum spp. genome has not yet been assembled and annotated, unlike other agronomic important species. So, the knowledge about sugarcane transcriptome become even more useful for supporting genomic analyzes studies. A draft assembly of sugarcane transcriptome was obtained from Illumina sequencing paired-ends libraries of five different plant organs, sampled from thirty elite clones. Analyzes of quality control and normalization was done in the RNA-seq data. Trinity package was used for de novo assembly. The scaffolds obtained and identified as complete ORFs were annotated according to Gene Ontology terms. The draft assembly was characterized by the identification of microsatellites and SNPs molecular markers and for assessing the contribution of different plant organs for transcriptome final assembly. The draft sugarcane transcriptome comprised 178 Mb, over 131,831 scaffolds, representing 61,225 genes. The transcripts average size was 1,350 bp and N50 value was 1,667 bp. A total of 1,250 transcripts identified as complete ORFs showed no similarity to sequences of the nr NCBI database, are considered new Transcript Active Regions (nTARs). The annotation performed using the KEGG database identified 234 transcripts coding for enzymes members of sucrose and starch metabolism, an important metabolic pathway for understanding the relationship between photosynthetic rate and sucrose accumulation in the stalk. The five plant organs used contributed equally for the draft sugarcane transcriptome. A total of 12,931 genomic regions were identified containing perfect microsatellites, with a predominance of di and tri nucleotide. On average, one SNP every 18 bp was identified, with more than four million SNPs identified with satisfactory values of haplotype and quality scores. The nucleotide diversity of thirty elite clones used in this study was high. The identification of these molecular markers, particularly SNPs markers, provides the possibility of using these polymorphisms in genomic and genetic studies of sugarcane, including the possibility of application of genome wide selection like breeding strategy. The sugarcane transcriptome draft assembly proposed in this study has data and analysis quality sufficient to be used in attempt to encompass a reference transcriptome for the species of Saccharum spp.Item Escurecimento de grãos em feijão: parâmetros genéticos e fenotípicos, associação com tempo de cocção, seleção assistida por marcadores e obtenção de linhagens elite(Universidade Federal de Goiás, 2015-03-31) Alvares, Renata Cristina; Melo, Patrícia Guimarães Santos; http://lattes.cnpq.br/1508679345970114; Melo, Patrícia Guimarães Santos; Bruzi, Adriano Teodoro; Silva Filho, João Luís da; Souza, Thiago Lívio Pessoa Oliveira de; Ganga, Rita Maria DevósThe breeding of common bean cultivars with Carioca grain, slow grain darken-ing, upright plant architecture, and high yield has become a growing challenge. Slow grain darkening will increase the storage time, providing flexibility for producers for the time of sale, and consequently increasing profitability. Studies have demonstrated the existence of genetic variability for this trait, allowing the selection of lines with slow grain darkening. The objectives of this study were i) to estimate genetic and phenotypic parameters of lines of four segregating common bean populations; ii) select those with slow grain darkening, upright plant architecture and high yield; iii) seek an association between slow darkening and cooking time of grains after storage; iv) evaluate two induction methods of grain dark-ening and v) validate the markers Pvsd-1158 and PVM02TC116, associated with grain darkening. The tested lines were derived from four segregating populations resulting from crosses between the cultivar BRSMG Madrepérola with slow grain darkening and the par-ents BRS Estilo, BRS Cometa, BRS Notável, and CNFC 10429. Three trials were installed with 220 lines (55 per population), and 5 parents in a 5x15 triple lattice design, with plots of two 3-m rows, at three locations. The experiments were conducted in the winter grow-ing season 2012, one in Santo Antônio de Goiás and two in Brasilia. The traits grain yield, plant architecture, grain darkening, 100-grain weight, and cooking time were evaluated. The variance components and genetic and phenotypic parameters were estimated, and the phenotypic, genetic and environmental correlation coefficients between grain darkening and cooking time, 90 and 180 days after harvest. Induction methods of accelerated and slow darkening were compared. From the markers Pvsd- 1158 and PVM02TC116, identi-fied as previously linked to the gene that controls grain darkening, the frequency of recom-bination and selection efficiency of the markers was estimated for each population and environment and in the mean of the environments. For slow grain darkening, the estimates of heritability, genetic variance and expected gain with selection were high, indicating good chances of successful selection. For yield, plant architecture and commercial grain size, the estimates of heritability and genetic variance were high, but indicated no high gains with simultaneous selection. Lines with slow grain darkening were obtained from the four populations; the highest number of lines that combined slow darkening with upright plant architecture, high yield, and commercial grain size were derived from the crosses BRSMG Madrepérola x BRS Estilo and BRSMG Madrepérola x BRS Cometa. No im-portant genetic correlation between grain darkening and cooking time was identified, there-fore, light-colored grains do not indicate a short cooking time. The induction methods of slow and accelerated darkening, provide similar information in the discrimination of lines with slow and regular darkening. The estimates of the recombination frequency for marker Pvsd-1158 were always low, indicating the close linkage of this marker to the gene that controls slow darkening, and were stable in the different environments and populations. Marker PVM02TC116 however was not polymorphic in three of the four populations. The recombination frequency of this marker in the polymorphic population was high, showing that it is unsuitable for marker-assisted selection for grain darkening.Item Interação de genótipos com ambientes para qualidade de grãos carioca e caracteres agronômicos em feijoeiro-comum(Universidade Federal de Goiás, 2015-10-07) Silva, Fernanda de Cássia; Melo, Patrícia Guimarães Santos; http://lattes.cnpq.br/1508679345970114; Melo, Patrícia Guimarães Santos; Souza, Thiago Lívio Pessoa Oliveira de; Mello Filho, Odilon Lemos de; Silva, Kaesel Jackson Damasceno e; Rodrigues, FabrícioIn the common bean crop, environmental influence and the differential behavior of genotypes to environments they have been reported for various important traits, and not restricted to grain yield. Initially, the producers crave for cultivars with high grain yield, early, maturing, upright plant architecture that is conducive to direct mechanized harvesting, commercial grain size and disease resistant. Unlike, the other segments of the production chain crave for grains with other attributes. For industry it is important that new cultivars present grains with high technology quality and processing and for consumers higher nutritional, cuisine and functional quality. Thus, these characteristics need to be combined to meeting the demands of the entire chain and enable the adoption of a new cultivar. And for this, the factors that influence the phenotypic expression of these traits require more studies. The objetive of this study were i) to study the effect of the genotype x environment interaction (GxE) in the grain yield associated with agronomic and grain quality traits and ii) identify carioca common bean genotypes that have simultaneously high adaptability and stability for these traits. Were conducted 79 trials Cultivation Value and Use (CVU) with carioca common bean lines, distributed in Distrito Federal and States of Goiás, Distrito Federal, Mato Grosso, Mato Grosso do Sul, Paraná, Santa Catarina, São Paulo, Pernambuco, Bahia, Alagoas and Sergipe. These experiments were conducted in the years 2011, 2012 and 2013, the sowing times of dry, winter and rainy. The experimental design was a randomized block design with three replications and plots of four lines, with 4 m row. The experiments consisted of 17 carioca common bean genotypes: thirteen elite lines and four controls (BRS Estilo, Pérola, BRS Sublime e CNFC 10762). The agronomic traits were evaluated: grain yield, plant architecture, lodging and reaction to anthracnose, angular leaf spot, common bacterial blight and wilt bacterial wilt, in addition to grain quality traits: visual aspect of grain, sieve in yield, 100 100 weight, cooking time and crude protein concentration. Individual and combined analyses of variance were realizedand analysis of adaptability and stability, the Nunes graphical method, for all characters. The index posts sum was used for the selection of genotypes favorable phenotypes for most traits, in addition to adaptability and joint stability. High environmental influence and interaction GxE in phenotypic expression for agronomic traits and traits related to grain quality was detected. It was possible to select genotypes with superiority for each character set. The use of the estimates of adaptability and stability combined with selection index was useful in evaluating genotype performance against the environmental variations. The lines CNFC 15033, CNFC 15070, CNFC 15025, CNFC 15049 and CNFC 15086 combined phenotypic good sized, high adaptability and stability for most agronomic traits. The genotypes who stand out for grain quality characters were CNFC 15097, CNFC 15038, CNFC 15025, CNFC 15033 and BRS Estilo. From these results, CNFC 15025, CNFC 15033, CNFC 15097 and CNFC 15038 line highlighted by to associate traits of agronomic interest the high quality of grain, as well as being stable and adapted to different cropping regions. Thus, these breeding lines have potential to be indicated as new cultivars and/or used as parents in breeding programs aimed at improving these phenotypes.Item Variabilidade genética populacional em variedades botânicas de Hancornia speciosa Gomes (Apocynaceae): estratégias para conservação no cerrado(Universidade Federal de Goiás, 2015-12-11) Rodrigues, Eduardo Borges; Collevatti, Rosane Garcia; http://lattes.cnpq.br/9979596352166630; Telles, Mariana Pires de Campos; http://lattes.cnpq.br/4648436798023532; Telles, Mariana Pires de Campos; Bertoni, Bianca Waléria; Almeida, Luciane Madureira de; Novaes, Carolina Ribeiro Diniz Boaventura; Chaves, Lázaro JoséDue to constant degradation, populations of plants in the Cerrado may be losing genetic variability, thereby them to stay in their natural habitat may be compromised. Aiming to generate useful genetic information for the implementation of conservation programs in situ and ex situ to Hancornia speciosa Gomes (mangabeira), this study aimed to evaluate the genetic structure of populations in H. speciosa occurring in the Cerrado, contributing to the knowledge genetic and spatial patterns related to geographic distribution and genetic differentiation between botanical varieties. In the first chapter it evaluated the magnitude of genetic diversity levels four botanical varieties of the species, and also the genetic divergence between them. As a result, it was observed that there is a high genetic diversity (He = 0.636), the assessed loci. The average values of genetic diversity observed heterozygosity, inbreeding coefficient intrapopulation and allelic richness were not significant, showing that there is no difference of these genetic parameters compared the botanical varieties of H. speciosa. And despite the variation between varieties to be significant (FCT = 0.027; p = 0.017) greater differentiation is between populations within varieties (FSC = 0.104; p <0.001) and in independent populations of varieties (FST = 0.131; p <0.001). The variety H. speciosa var. speciosa presents with the botanical variety genetically most divergent, then the variety H. speciosa var. cuyabensis. Phenotypic plasticity may be contributing to differentiate between botanical varieties. In the second chapter, the genetic variability within and among populations of H. speciosa throughout the Brazilian Cerrado was evaluated and, if there is spatial pattern of genetic variability on a regional scale, along the geographical distribution of the species. As a result, it was observed that populations have high genetic variability and significant inbreeding (f = 0.103) due crosses between unrelated individuals. The genetic differentiation between populations was moderate to high, but significant (θ = 0.126; RST = 0.253). The differentiation of populations occurred as a result of isolation by distance. Populations with distance up to 280m were more similar than expected by chance. There were significant signs of genetic bottleneck for some natural populations of mangabeira. In the third chapter, it was shown as conservation planning procedures can be used to establish optimal strategies of conservation in situ and ex situ of a single species, using H. speciosa, a species widely distributed in the Brazilian Cerrado, as a case study. Nine populations were selected as priorities for conservation in situ and another seven were considered ideals in addition to the genetic variability of the germplasm collection of the Universidade Federal de Goiás.Item Distribuição da variabilidade genética e fluxo de pólen em subpopulações de Annona crassiflora Mart. (Annonaceae)(Universidade Federal de Goiás, 2015-12-21) Almeida Júnior , Edivaldo Barbosa de; Soares , Thannya Nascimento; http://lattes.cnpq.br/5590256762396056; Soares, Thannya Nascimento; Chaves , Lázaro José; Borba , Tereza Cristina de Oliveira; Collevatti , Rosane GarciaThe Annona crassiflora Mart. species (Annonaceae) is a fruit plant native from Cerrado, widely distributed throughout the biome. The goal here was evaluate the spatial distribution of genetic variability in natural subpopulations of the species, geographically, and relate the genetic diversity levels with climatic and landscape profile, furthermore the pollen dispersal within a subpopulation. We used here six pair of microsatellite primers. To evaluate thedistribution of genetic variability we sampled 25 natural subpopulations, 30.6 plants per subpopulation, on average. We estimate the genetic diversity (He), allelic richness (Ar), fixation index (f), genetic structure, using coancestry coefficient (θ) and inbreeding coefficient of overall population (F). The spatial pattern the genetic variability was evaluated by Mantel test, Moran's I index and linear regression of genetic parameter with two spatial dimensions (latitude and longitude). We correlate He, Ar and f with climate suitability and the percentage of Cerrado vegetation around subpopulations. Furthermore we evaluated the pollen dispersal by paternity analysis, using 572 plants, including 460 seeds, 20 mother plants and 92 pollen donors candidate, within a natural subpopulation. The outcrossing rates were also evaluated in maternal families using the mixed mating model. The outcrossing rates indicate mating system with prevalence of allogamy. The assignment of paternity indicated that gene flow mainly occurs in short distances, until 360 meters, in the subpopulation evaluated. The 25 subpopulations have moderate genetic diversity levels and strong genetic structure. We found inbreeding due to the subdivision, but not in mating within subpopulations. The demes belongs to two consistent groups with genetic discontinuity between the northwest and southeast subpopulations distribution. The genetic diversity and allelic richness showed strong relationship with longitude, suggesting a range expansion in the southeastern direction. We noted that spatial distribution of genetic diversity and allelic richness are related to suitability at the last glacial maximum, by an indirect effect of geographical distances, whereas no relationship was observed regarding present suitability. The percentage of cover natural vegetation, in turn not explain the spatial distribution of genetic diversity, allelic richness and inbreeding coefficient.Item Avaliação da eficiência da rede experimental da Embrapa em dez anos do programa de melhoramento do feijoeiro-comum(Universidade Federal de Goiás, 2016-02-25) Pontes Júnior, Vilmar de Araújo; Melo, Leonardo Cunha; Pereira, Helton Santos; Melo, Patrícia Guimarães Santos; http://lattes.cnpq.br/1508679345970114; Melo, Leonardo Cunha; Chiorato, Alisson Fernando; Silva Filho, João Luís da; Melo Filho, Odilon Lemos de; Torga, Paula PereiraThe assay of VCU (Value of Cutivation and Use), called of final trials, are in network conducted and are systematized in an organized manner which includes the states responsible for over 90% of national production of common bean. The final trials are realized in different locations, seasons and years, aiming of superiors line selection: productive, stable, adapted and with disered agronomic attributes. The genotypes environments interaction (GE) in plant breeding program has implications numberless, mainly in phase of lines final evaluation. In this case, alternatives to minimize the effect of the GE interaction should search. Among them stand out: identification of predictable behaviors of the cultivars, stratification of recommendation regions in homogeneous subregions and decomposition of GE interaction, aiming at identifying of the factors whose interaction is more expressive. The aim of this study was realize environmental stratification of network final trials and decompose the genotypes interactions with environment factors (locations, seasons and years), during ten years of common bean program at Embrapa of grains "carioca" and black, in main three producing regions in brazilian (R1-South-Central, R2-Central, R3-Northeast). In study of environmental stratification also was evaluated representativeness of base locations of this program. Data for grain yield of the conducted trials in random blocks, with three replications, during 2001 until 2012, 670 trials total (292 in R1, 250 R2 and 128 R3). During all period were evaluated 88 genotypes of “carioca” group (76 lines and 12 checks) and evaluated 71 genotypes in black group (58 lines and 13 checks). In all regions the local effect were considered as random and genotypes fixed. Environmental stratification was separately realized in the main crop seasons of each region, utilized factors analysis methodology and ecovalence. For simultaneously utilization were estimated redundance index joint: redundance percentage (RP), redundance fraction (RF) and redundance percentage in season (RPS). The elimination local was established based observing the three index redundancy values (RP ≥ 15%, RF ≥ ½ e RPS ≥ 50%). To R1, Candoi-PR, Palma-SC, Catanduvas-PR, Campos Novos-SC, Laranjeiras do Sul-PR, Roncador-PR e Dois Vizinhos-PR in rainy seasons and Passo Fundo-RS, Prudentópolis-PR e Dourados-MS in dry seasons were considered redundant, should be eliminated of the trials network. The new evaluation network would be formed by 29 municipalities in rainy and twelve municipalities in dry, considered informative at final trials network. In R2, Morrinhos-GO, Inhumas-GO, Urutaí-GO, Santo Antônio de Goiás-GO, Cristalina-GO e Planaltina-GO e Sinop-MT in rainy and Porangatu-GO, Goiatuba-GO, Urutaí-GO, Senador Canedo-GO, Cáceres-MT, Primavera do Leste-MT e Brasília-DF in dry were redundantes and should be eliminated of the network. This region stayed with 12 municipalities available for realization of the rainy season assays and ten in winter season. To R3, should be eliminated of the network Coronel João Sá-BA, Poço Redondo-SE, Nossa Senhora das Dores-SE, Simão Dias-SE, because, no aggregate in informations to evaluation of the lines, it was uninformative. For this region remained 14 municipalities to composition of the network. Can be concluded than evaluation network at Embrapa represented efficient form variation of the cultive with common bean in Brazil and than environments base of the breeding program in regions South-Central and Central, are consistentes and informative, except during in the rainy season in that Santo Antônio de Goiás-GO is not mandatory enter the assays network. Especially, Ponta Grossa and Santo Antonio de Goias-GO, than are evaluation strategic points of the segregation populations and initial lines, of the common bean breeding program genetic at Brazil. To check with which environmental factors (locations, seasons and/or years) of the common bean genotypes interaction was more expressive, the GE interaction was decomposed in genotypes x years, genotypes x seasons and genotypes x locations. Were utilized grain yield of data 501 trials, 207 in R1, 202 in R2 and 92 in R3. For the fisrt two regions the analysis were partially balanced, this is, only utilized trials data of the locations had evaluation at least one season and in two years each cycle. In R3 the joint analyses were balanced, considered just assays data of the locations with evaluation in two years of the each cycle. In all regions genotype effects, local, season and year were considered fixed. To identify importance of the each variation source from joint variance analyse was estimated contribution of each in relation overall variation, used estimated determination coefficient (R2). The contribuition average over years for genotypes effect in all regions, at “carioca” and black group was important less, followed followed year and season. However, local with interaction was more pronounced in all regions. The interaction GxL was more important in the three regions for both groups, compared with intractions GxS and GxY. Thus, in the R1, R2 and R3, priority should be given of locations increment number evaluation, over seasons and years, aiming at more efficient and safe recommendation of new cultivars to the main producer regions common bean of Brazil.Item Estudo de associação genômica ampla para produtividade em arroz (Oryza sativa L.)(Universidade Federal de Goiás, 2016-04-06) Pantalião, Gabriel Feresin; Brondani, Claudio; http://lattes.cnpq.br/4775600104554147; Brondani, Claudio; Coelho, Alexandre Siqueira Guedes; Souza, Thiago Lívio Pessoa Oliveira de; Borba, Tereza Cristina de Oliveira; Vianello, Rosana PereiraCultivated rice (Oryza sativa L.) is one of the most important cereal for feeding. It is estimated that the demand for rice grains increases considerably in a reduction scenario of cultivable area and scarcity of water resources, which will require an increase in production compared to current levels. To solve this problem, a viable alternative would be the exploitation of genetic diversity available in rice germplasm banks. Rice breeding programs should prioritize the search for new strategies to increase yield in a variety of environmental conditions. The exploitation of genetic diversity allowed the identification of favorable alleles not present in the germplasm of rice varieties used in breeding programs, as well as obtaining new allelic combinations of genes related to important agronomic traits and that could significantly contribute to the achievement of more productive cultivars. In this context, genome-wide association studies (GWAS) are designed to analyze variations in the DNA sequence of the entire genome in an effort to identify associations with phenotypic traits of interest. It is expected, therefore, that the results of the GWAS analysis, together with the improvements obtained with the next generation sequencing technologies (NGS) in search of a large number of SNPs, such as genotyping by sequencing (GBS), be used to investigate the genetic control of traits related to yield. This study aimed to identify genomic regions of rice related to yield from the GWAS methodology using genotypes of Embrapa Rice Core Collection (ERiCC). The GWAS analysis was conducted from a panel of 550 accessions of the ERiCC, and after the imputation of raw data, were accounted 445,589 SNPs distributed along the 12 rice chromosomes. The molecular information was integrated with phenotypic data derived from yield evaluation experiments conducted in nine essays, divided into two cultivation systems (irrigated and rainfed) and three agricultural years (2004/2005, 2005/2006 and 2006/2007). From the joint analysis in all experiments, 31 SNPs were significantly associated with yield, but only three had the lowest frequency allele with positive effect. The joint analysis of irrigated experiments identified three SNPs associated with yield, of which one with lower frequency allele with a positive effect, whereas in the rainfed experiments was identified only one SNP with lower frequency allele associated to positive effect. Subsequently, a stepwise regression analysis was performed to keep in the model only SNPs without overlapping effects, so being selected 15 SNPs markers. After in silico analysis, it was found that the most productive accessions showed 80 to 100% of favorable alleles while the less productive showed 27 to 33% of favorable alleles. For this set of markers to be used in an assisted selection routine, they should also be validated in the laboratory. In the total joint analysis, from 44 genes identified, 14 had no particular function, while from the joint analysis of experiments irrigated and rainfed, from the six genes, only one had no particular function. The search for Arabidopsis homologues genes in the 15 unknown function rice genes resulted in four genes with known function. The expressed products of the set of genes were related to metabolic processes, response to biotic, abiotic, endogenous and external stimulus, post- embryonic multicellular development, growth and morphogenesis, which influence the number of grains, grains weight and photosynthetic capacity, all related to rice yield and be useful in indicating candidate genes to cloning and transformation, enabling the development of genetically superior rice cultivars. Among the genes identified as associated to productivity, nine were previously described in the literature, and of these, six were related proteins that influence the number and seed weight, and photosynthetic capacity: LOC_Os02g44290.1, LOC_Os04g35370.1, LOC_Os02g44260.1, LOC_Os02g44280 .1 LOC_Os09g36230.1 and LOC_Os01g66160.1. These genes are considered as candidates for cloning and transformation of rice, in order, through its overexpression, enable the development of higher yielding rice cultivars.Item Variação genética quantitativa e estrutura populacional de Hymenaea stigonocarpa (Mart. Ex Hayne) no cerrado(Universidade Federal de Goiás, 2016-05-30) Castro, Rodrigo Soares de; Telles, Mariana Pires de Campos; http://lattes.cnpq.br/4648436798023532; Diniz Filho, José Alexandre Felizola; http://lattes.cnpq.br/0706396442417351; Chaves, Lázaro José; http://lattes.cnpq.br/9990967290797379; Chaves, Lázaro José; http://lattes.cnpq.br/9990967290797379; Novaes, Evandro; Rodrigues, Flávia Melo; Moura, Nara Fernandes; Soares, Thannya NascimentoThis study aimed to analyze the quantitative genetic variation within and between natural subpopulations of Hymenaea stigonocarpa (Mart. Ex Hayne), fruit tree from the Cerrado region. Six mother trees were sampled in each of the 25 subpopulations from the states of Goiás, Mato Grosso, Mato Grosso do Sul, Minas Gerais and Bahia, covering a large area of the Cerrado biome. In each tree they were collected twenty fruits, which served for evaluation of biometric data of fruits and seeds. Twenty seeds of each mother tree were sown in a nursery, with five seeds per plot in four randomized blocks, constituting a test of provenances and progenies of half sibs. Analysis of variance were performed using the hierarchical model for the characters of initial development. With the produced seedlings it was planted a germplasm collection in vivo in Escola de Agronomia of Universidade Federal de Goias.The major phenotypic variation coefficients in fruits and seeds were found in the characters number of seed (47,87%) weight of the pulp (47.74%) and fruit weight (44.06%). The analysis of variance of the physical characteristics of the fruits and seeds revealed the existence of significant variation for all characters in all levels analyzed: among subpopulations, between mother trees within subpopulations and between fruit within mother tree. Of the ten characters analyzed in six the greatest variation was found between fruit within mother tree. Significant variability was found between subpopulations and between progenies within subpopulations for most quantitative traits studied, showing a great genetic variability of the sampled material, which is important for sustainability of the species and future breeding program. The heritability estimates of traits were also high, indicating success in the selection of desirable traits in a breeding program for the species. The comparative analysis between the estimated value of the QST and FST index showed no significant difference for eight of ten characters analyzed, demonstrating that there is no evidence of the action of natural selection in the differentiation between the studied subpopulations and that the differentiation found can be explained by the action of genetic drift combined with gene flow restriction between subpopulations. The value of correlation coefficient between phenotypic and geographical matrix was 0.164 (p <0.05) by Mantel test, indicating a weak correlation between the phenotypic subpopulations means and the distances between them.Item Seleção recorrente genômica como estratégia para aceleração de ganhos genéticos em arroz(Universidade Federal de Goiás, 2016-12-15) Morais Júnior, Odilon Peixoto de; Breseghello, Flávio; http://lattes.cnpq.br/4531282348131391; Coelho, Alexandre Siqueira Guede; http://lattes.cnpq.br/0840926305216925; Duarte, João Batista; http://lattes.cnpq.br/4117228759548186; Duarte, João Batista; Breseghello, Flávio; Coelho, Alexandre Siqueira Guedes; Silva Filho, João Luis da; Resende, Marcela Pedroso MendesGenetic gains for quantitative traits associated with the maintenance of genetic variability are important factors in recurrent selection programs. With advances in the area of statistical genomics, selection strategies potentially faster to achieve genetic gains are being developed, such as genomic selection. Using a subtropical population of irrigated rice (CNA12S), conducted during three cycles of recurrent selection, this study had as general objective to evaluate the potential of use of genomic recurrent selection (GRS) in a rice breeding program. Three specific studies were developed. In the first chapter, the efficiency of the genotypic recurrent selection (RS) used in the Embrapa’s rice breeding program was evaluated, in order to obtain genetic gains and maintain the population genetic variability. Ten yield trials of S1:3 progenies were used in the analyses. The evaluated traits were grain yield, plant height and days-to-flowering. Variance and covariance components were obtained using Bayesian approach. Using single nucleotide polymorphisms (SNP) markers, the population diversity and genetic structure also were estimated. Adjusted means of progenies in each cycle were computed and, genetic progress was estimated by generalized linear regression using frequentist approach. The magnitudes of effective population size and genetic variance indicated maintenance of genetic variability over selection cycles. The genetic progress achieved for grain yield was 760 kg ha-1 per cycle (1.95% per year), and for days-to-flowering, it was -6.3 days per cycle (-1.28% per year). It was concluded that the genetic progress already achieved and the genetic variability available in the population demonstrate the efficiency of RS in the improvement of rice populations. In the second chapter, in the context of genomic selection, the relative efficiency of GRS on RS was assessed, as well as the accuracy of different models of genomic prediction, in order to propose a GRS scheme for population breeding of self-pollinating species such as rice. In this study, the genetic material was the S1:3 progenies yield trial of the third selection cycle. From a group of 196 progenies that were phenotyped for eight traits with different heritabilities and genetic architectures, a group of 174 progenies was genotyped for SNP markers. Ten predictive models were fitted to the data set. The proposed GRS scheme, when compared to the RS method, showed higher efficiency, especially in genetic gain per unit of time. From the predictive models assessed, HBLUP (hybrid best linear unbiased prediction, using hybrid relationship matrix based in pedigree and SNP markers) and RForest (random forest) have greater potential for genomic prediction in irrigated rice, given the high accuracy of their predictions for a number of traits. The HBLUP model was notoriously superior for more complex traits, such as grain yield, while RForest stood out for less complex traits. The high extent of linkage disequilibrium in the population suggests that the marker density employed (approximately one SNP per 60 kb) is enough for the practice of genomic selection in populations with similar genetic structure. In the third chapter, the objective was to extend a class of HBLUP models based on reaction norm, in context of multi-environmental trials with genotype x environment interaction, for accommodation of hybrid genetic relationship and information of the assessed environments. The accuracy of alternative models for multi-environmental predictions was evaluated, as well as the relative importance of structures of additive and multiplicative components, using genetic relationship information and environmental covariates. This strategy allowed to evaluate the influence of different approaches to group the genetic-environmental information on the accuracy of models for prediction of breeding value of progenies for agronomic traits. The data consisted of the same ten trial of S1:3 progenies, carried out during three recurrent selection cycles. Six predictive HBLUP models of reaction norm were considered, using genetic and environmental covariates, as well as interactions between these effects. Genomic information was derived from SNP markers obtained for the 174 progenies of the third selection cycle. The 401 environmental covariates, the genetic information (hybrid genetic relationship) and the interactions among these effects explained an important portion of the phenotypic variance, allowing an increase in the predictive accuracy of models. The use of genetic information and environmental covariates only from the respective selection cycle is enough for accurate predictions of unphenotyped progenies, even in non-sampled environments. This is the first study to take into account simultaneously hybrid genetic relationship, stemming from pedigree information plus SNP markers, and environmental covariates in multi-environmental models based on reaction norm for breeding value prediction in target environments of a recurrent selection program.Item Método para fenotipagem de raiz e mapeamento associativo para tolerância à deficiência hídrica em arroz(Universidade Federal de Goiás, 2017-03-27) Guimarães, Paulo Henrique Ramos; Castro, Adriano Pereira de; http://lattes.cnpq.br/5171386609626615; Melo, Patrícia Guimarães Santos; http://lattes.cnpq.br/1508679345970114; Raissac, Marcel de; Borba, Tereza Cristina de Oliveira; Colombari Filho, José Manoel; Brito, Giovani Greigh de; Melo, Patrícia Guimarães SantosClimate change and its influence on agriculture have been a recurring theme at world leaders' meetings. Expected climate change to be accompanied by increases in temperature, periods of water restriction and changes in the biological cycle of pests and diseases. Perhaps there will be changes in agricultural geography, regions suitable for growing of the crops may become unfit. The rice (Oryza sativa L.) which is considered to be an important food source, but is sensitive to water restriction conditions, may be drastically affected by such changes. In this way, the aims of this study were: (i) evaluated the root system of the accessions of the upland rice; (ii) identify SNPs markers and associate then with the morphologic traits to early vigour in rice under water restriction. We evaluated a panel of rice diversity. In the first trial we evaluated 217 accessions on a phenotyping platform (Integrated System for Induced Drought Treatment - SITIS). This trial was conducted in 2014, under well water conditions, we evaluated the tiller number and different characteristics of root system (root length, root volume and Indices derived from the root length system) in two layers (0-20 cm and 20-40 cm). These traits were evaluated through non-invasive root scanner images. We observed that there was variability to root length and root volume besides there was accessions with well root system distribution in the two layers evaluated. Using the variables:𝐿𝑇1𝑃1 , α𝐿1, Δ𝐿𝑃1, Δ𝐿𝑃2, 𝐿𝑇1𝑃2 _𝑅𝐺 and NBT was possible to discriminate the accessions as well recover and describe the root system architecture. The second trial was conducted with a subset with 140 accessions (selected in previous years). This trial was conducted in the 2015 and 2016 in field conditions under two water conditions (well water and water restriction). The traits evaluated were: leaf number (NBL), tiller number (NBT), plant height (PH), length of blade (LLL), blade width (LLW) and shoot dry weight (SDW). These evaluations were done 30 and 45 days after sowing (DAS). At 30 DAS the plants were submitted to water restriction for 15 days. There was significant differences for the all traits evaluated. There was significant reduction in shoot dry weight (43%), plant height and blade width (18%). The traits evaluated were related to each other, the most of correlations there were low, however positive and significant. We identified 64 significant markers (p-value<0.05), however these markers were associated only the PH at 30 DAS and 45 DAS. The markers detected showed small effect explaining between 15 and 30% of the total phenotypic variation. Thus is connotative that the early vigour in rice is controlled by many genes of small effect. The locus identified as associated may improve understanding of the mechanisms underlying water deficit tolerance in rice. These can be used for marker assisted breeding.Item Melhoramento genético para altos teores de ferro e zinco em feijoeiro-comum(Universidade Federal de Goiás, 2017-03-30) Di Prado, Poliana Regina Carloni; Melo, Leonardo Cunha; http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4763166D1; Melo, Patrícia Guimarães Santos; http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4763166E8; Pereira, Helton Santos; http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4766267Z4; Pereira, Helton Santos; Melo, Patrícia Guimarães Santos; Souza, Thiago Lívio Pessoa Oliveira; Rodrigues, Fabrício; Silva Filho, João Luiz daThe iron and zinc deficiency reaches millions of people worldwide, generating public health problems. One of the most viable alternatives to minimize this issue is the biofortification and the common bean stands out as a crop with wide potential to be biofortified. The objectives of this work were: i) to verify the importance of genetic (G), environmental (E) and G x E interaction effects for iron content (FeC) and zinc content (ZnC) in common bean grains and to identify the cultivars/lines that associate high potential for FeC, ZnC, protein content (PtC), yield and weight of 100 grains (W100); ii) to verify if exists genetic relation between these traits; iii) to obtain, evaluate and select promising common bean segregating populations for high FeC and ZnC, yield and W100; iv) to estimate parental general (GCA) and specific (SCA) combining ability for FeC and ZnC, aiming the understanding of genetic control and the selection of parental lines; v) to estimate genetic parameters and to select lines for FeC, ZnC, yield and W100; vi) to validate microsatellites molecular markers (SSR), previously identified as linked to QTLs for FeC and ZnC in common bean, in breeding populations, with high mean. On the first study, to verify the importance of G x E interaction, 34 genotypes were evaluated at 19 environments, assessing the FeC, ZnC, PtC, yield and W100. Combined analyses of variance, adaptability and stability analyses by Nunes graphical method were performed, in addition to the estimation of genetic correlations between the traits. There were significant differences between genotypes for all traits. The environment and interaction effects were significant, and the environment represented the most of total variation, 63% (FeC) and 65% (ZnC), followed by G x E interaction effect, 18% (FeC) and 15% (ZnC). The cultivar BRS Sublime, with carioca grains type, combined high FeC, ZnC, PtC, yield and grains with commercial size, in addition to wide adaptability and stability. The genetic correlations between FeC x ZnC, FeC x PtC and ZnC x PtC were significant and positive, indicating, likely, the occurrence of pleiotropy or that some genes that control these traits are linked. It is concluded that, due to the great environmental effect influencing FeC and ZnC the evaluation trials of these traits should be performed in multiple environments. On the second study, 15 segregating populations were obtained and evaluated from crosses on complete diallel design between six parental lines selected for high FeC and ZnC. The populations were assessed at Santo Antônio de Goiás-GO, on winter/2012 (F2), winter/2013 (F3) and rainy/2013 (F4) seasons, and at Brasília-DF, on rainy/2013 (F4) season. The traits evaluated were FeC and ZnC, yield and W100. Significant differences were detected between the populations for all traits. Based on the combine analysis, for FeC additive effects were more important and the line G 2358 stood out by its high GCA (5.63). For ZnC, both additive and non additive effects were important, however no parental line showed significant GCA. The populations selected simultaneously for all four traits, based on combined analysis, were Porto Real x G 2358, BRSMG Majestoso x G 2358, BRS Requinte x BRSMG Majestoso, Porto Real x BRS Requinte and Porto Real x BRSMG Majestoso. The population BRS Requinte x G 2358 is indicated for extraction of lines with high FeC and ZnC. It is concluded that the parental G 2358 has great potential and must be used in new crosses to increase FeC in common bean grains. The population BRS Requinte x G 2358, that presented excellent performance for FeC and ZnC, and the population BRS Requinte x Porto Real, selected simultaneously for all traits, must follow on the breeding program for lines extraction. On the third step of this work, 116 lines of these two populations and five controls were assessed, in a triple lattice experimental design 11x11, at three environments and FeC, ZnC, yield and W100 were evaluated. Analyses of variance and the estimation of genetic parameters were performed. It was also performed the genotyping of the parental lines and lines of these populations with 20 SSR previously identified as linked to FeC and ZnC QTLs and, later, it was performed the single marker mapping analysis. Differences were identified between the lines at all environments for all traits. The estimates of heritability and expected gain from selection indicated the possibility of obtaining genetic gains for each trait individually. On simultaneous selection of lines for the four traits, based on combined analysis, the expected gains from selection of the best 24 lines were 4.7% for FeC, 2.8% for ZnC, 3.9% for yield and 0.9% for W100. Only the marker BM 154 was polymorphic and only on population BRS Requinte x Porto Real. The single marker mapping analysis showed association only between BM 154 and FeC, at one environment, explaining 14.5% of the phenotypic variation. It is concluded that there is possibility on selecting lines that combine desired phenotypes for the four traits of interest and that, likely, the QTLs linked to the tested markers are already fixed and that there is the presence of QTLs x environments interaction.Item Potencial genético de linhagens elite de feijoeiro-comum para fixação biológica de nitrogênio(Universidade Federal de Goiás, 2017-04-07) Dias, Polianna Alves Silva; Pereira, Helton Santos; http://lattes.cnpq.br/0729719587905292; Ferreira, Enderson Petrônio de Brito; http://lattes.cnpq.br/6292879655540619; Melo, Patrícia Guimarães Santos; http://lattes.cnpq.br/1508679345970114; Melo, Patrícia Guimarães Santos; Pereira, Helton Santos; Melo, Leonardo Cunha; Resende, Marcela Pedroso Mendes; Reis Júnior, Fábio Bueno dosIn species rich in protein, like common bean, the nitrogen is considered as the most limiting nutrient in the development of the crop. One way to acquire the N by common bean is through biological nitrogen fixation (BNF). Despite its importance, there are no studies aiming the selection of common bean genotypes under rhizobia inoculation in multiple environments. Thus, the objectives of this studies were: to study the effect of interaction (GxF) of common bean elite lines with nitrogen fertilization and/or rhizobia inoculation; to select lines with high grain yield adaptability and stability and high agronomic performance when inoculated with rhizobia; to assess the variability of the elite lines for the nodulation traits; and to identify lines with superior nodulation traits under BNF cultivation. They were evaluated 19 carioca genotypes and 15 of the black group, in trials conducted separately by grain group. At first, experiments for the evaluation of agronomic traits were conducted at the states of Goiás, Paraná, Mato Grosso and at Distrito Federal, in three sowing seasons (rainy, winter and dry), in 2011 and 2012. Two trials were installed at each environment (location/sowing season/year), one with mineral nitrogen fertilization (80 kg N ha-1) and another with the inoculation of the seeds with Rhizobium tropici and R. freirei strains. The grain yield, sieve yield, 100 grains weight, plant architecture, lodging tolerance and the reaction to anthracnose and angular leaf spot were evaluated. Then, the lines were evaluated during rainy/2013 and winter/2014 seasons, at Santo Antônio de Goiás/GO, under rhizobia inoculation and nitrogen fertilization, in which they were assessed the nodule number, nodule dry and specific weight, nodules activity and shoot dry weight. The relative nodulation index was used on the selection of lines for the nodulation traits. Individual and combined analyses of variance were performed and they were estimated the Spearman correlations and the coincidence index on the selection of the best 30% lines with inoculation and with N fertilization. Grain yield adaptability and stability analyses were performed by the Nunes graphical method. Even though the interaction GxF was significant for some traits in both grain groups, it did not influence on the selection of the best genotypes. The lines of both groups are more productive when fertilized with mineral N, however, the carioca lines lodge less under BNF. The carioca line CNFC 15086 and the cultivars of black group BRS FP403 and BRS Esteio are indicated for cultivation under both N sources. The lines of both grain groups show higher performance for nodulation traits when inoculated. The genotypes BRS Sublime, CNFC 15010 and CNFC 15003 of the carioca group, and BRS Campeiro and CNFP 15177 of the black group are selected for the nodulation traits.